Installation

We provide two installation methods: PyPI and Source Installation.

Prerequisites

Before you begin, ensure you have the following installed:

Python 3.10+
PyTorch 2.5+
Transformers 4.46.0+

Installation

Installation with PyPI

pip install omnigenome -U

Installation from Source

For majority of OmniGenBench users, installing from a pre-built package is recommended. However, if you want to install from source, you can do so by following the steps below.

git clone https://github.com/COLA-Laboratory/OmniGenBench.git
cd OmniGenBench
pip install -e .

Contributing

If you are interested in contributing to OmniGenBench, please refer to the Contributing Guide for details.

git clone https://github.com/COLA-Laboratory/OmniGenBench.git

License

This project is licensed under the Apache License 2.0. See the LICENSE file for details.

Acknowledgements

We would like to thank the following projects for their contributions to this project: